PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027124054.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 510aa MW: 56539.3 Da PI: 6.4718

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027124054.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	92	110	3	21
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C +Cgk F+++ +L H+r XP_027124054.1 92 CAICGKDFPSRKSLFGHMR 110 ******************8 PP
2	zf-C2H2	13	0.0003	363	385	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+Fs++ L H ++H XP_027124054.1 363 FRCSTCDKTFSSHQALGGHRSSH 385 89**************9999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence
MEENKNSNLG KEKQSGSVEG ENNHHQSKTN PVSIDGKLLV KLKFPKGAEE TEEGLSAHVQ 60 ARENLKKLKF YKSIKFKRDG SSSDAAARET ICAICGKDFP SRKSLFGHMR CHPDREWRGM 120 EPPKEQGKIP HDHPQCFSNL DDDEEEEEEE EDESLDTDNH ADYHVDAVAD NVAISTVAEV 180 VDLTRSMSSW SVKGKRGGEC PRVLLDTYSE EEEQKILDAV DQLISLAHKQ IIHDGSSTRR 240 GQIKEARNGA SGLKKKRVDD QVHPARVRRD YPVKKRQFSE IATDSEETLD GLLDKGKRKD 300 PMKPESGIEI SSSSQSRQTV IGKCGGQEQE KGAKDNTQEF RNRRGTYPLN QKLDGEESTP 360 EKFRCSTCDK TFSSHQALGG HRSSHNKFKA TVQNTANGSS PFPSGHGNRA KPVSQTAAEN 420 DEIKRVDASK FAENIHECTL CKKTFPSGQA LGGHKRCHWQ GLSSQVASPE AEEPRPLVRK 480 GLQFDLNEPA EEEDANASDL GNSSGYASCS

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence

MEENKNSNLG KEKQSGSVEG ENNHHQSKTN PVSIDGKLLV KLKFPKGAEE TEEGLSAHVQ  60
ARENLKKLKF YKSIKFKRDG SSSDAAARET ICAICGKDFP SRKSLFGHMR CHPDREWRGM  120
EPPKEQGKIP HDHPQCFSNL DDDEEEEEEE EDESLDTDNH ADYHVDAVAD NVAISTVAEV  180
VDLTRSMSSW SVKGKRGGEC PRVLLDTYSE EEEQKILDAV DQLISLAHKQ IIHDGSSTRR  240
GQIKEARNGA SGLKKKRVDD QVHPARVRRD YPVKKRQFSE IATDSEETLD GLLDKGKRKD  300
PMKPESGIEI SSSSQSRQTV IGKCGGQEQE KGAKDNTQEF RNRRGTYPLN QKLDGEESTP  360
EKFRCSTCDK TFSSHQALGG HRSSHNKFKA TVQNTANGSS PFPSGHGNRA KPVSQTAAEN  420
DEIKRVDASK FAENIHECTL CKKTFPSGQA LGGHKRCHWQ GLSSQVASPE AEEPRPLVRK  480
GLQFDLNEPA EEEDANASDL GNSSGYASCS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03510.1	2e-19	C2H2 family protein