PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027124148.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 420aa MW: 49893.7 Da PI: 9.5277

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027124148.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	36.6	1.5e-11	26	122	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr....traetrtgCkaklkvkkek..dgkwevt.....klele 84 kfYn+YA ++GFsvrk++ +k ++g +t+r++ C ke +++ k ++++ +++ + ++C ++ ++++ + ++v+ +l+l+ XP_027124148.1 26 KFYNKYAFKMGFSVRKNYLNKD-KDGVTTSRRYSCCKECVKRTMKYRQHN--LvldyNHVLHIVQCSHMMPLQRKVseVQGFQVEisedaRLSLK 117 6***************9998.8899*******999888777222..12344999999*****9999874434444431122245577 PP FAR1 85 HnHel 89 nHel XP_027124148.1 118 QNHEL 122 77777 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
MDCSKLTEDG ISELGMEFSI EDDAYKFYNK YAFKMGFSVR KNYLNKDKDG VTTSRRYSCC 60 KECVKRTMKY RQHNLVLDYN HVLHIVQCSH MMPLQRKVSE VQGFQVEISE DARLSLKQNH 120 ELMGKEAGGM GNVGYARDDL KRYLRTRRER NLKYGETEVM CGKRPNTILT DQDHAMAAAL 180 SLVMLQTFHG LCTFHIRRNF MKYLGNHYKD NSDIPYMFGA CMYEIEEVKQ FNRVWESMVK 240 KHNFKNNEWL TGLYRIPDKW ARCMMKELWT VRIHFNRVVD DKRHNKLIAE YEMRQKLPMV 300 GLRQTPIFVH AAEMYSQTVF ITFQNEYGES TTMIILRQQR MFVEFAVMRY DGGPERIVVF 360 NRNDLSVRFS CKKYENDEIL CGHALKVFDT VGIKTISPEY VKRRWTKRVR ARDCFDRRAL

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

MDCSKLTEDG ISELGMEFSI EDDAYKFYNK YAFKMGFSVR KNYLNKDKDG VTTSRRYSCC  60
KECVKRTMKY RQHNLVLDYN HVLHIVQCSH MMPLQRKVSE VQGFQVEISE DARLSLKQNH  120
ELMGKEAGGM GNVGYARDDL KRYLRTRRER NLKYGETEVM CGKRPNTILT DQDHAMAAAL  180
SLVMLQTFHG LCTFHIRRNF MKYLGNHYKD NSDIPYMFGA CMYEIEEVKQ FNRVWESMVK  240
KHNFKNNEWL TGLYRIPDKW ARCMMKELWT VRIHFNRVVD DKRHNKLIAE YEMRQKLPMV  300
GLRQTPIFVH AAEMYSQTVF ITFQNEYGES TTMIILRQQR MFVEFAVMRY DGGPERIVVF  360
NRNDLSVRFS CKKYENDEIL CGHALKVFDT VGIKTISPEY VKRRWTKRVR ARDCFDRRAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	6e-24	FAR1 family protein