PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027124200.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 365aa    MW: 40103.4 Da    PI: 6.3427
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027124200.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.33.4e-10167191126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y +++C++f++ GtC++Gd C +aHg
  XP_027124200.1 167 YSYVPCPDFHK-GTCQRGDACEYAHG 191
                     7799*******.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    
MGDFVSSSSE LLEFSASDDL SAFMVAVERE GHGIDELAVW YGRRIGSKEM GLEERTPLMI  60
ASMFGSKRVV NYILEKGGID VNKTCGSDGA TALHCTVAGG FAASLEIVRL LPSLPDIKNG  120
IYGTDEFRMY TFKIKPCSRA YSHDWTECPF VHPDENARRR DPRKYHYSYV PCPDFHKGTC  180
QRGDACEYAH GIFECWLHPA QYRTRLCKDE TNCTRRVCFF AHKPEELRPL YASTGSAVPS  240
PRSFSSSAST FDIASISPLA LSSPSIMMPP PSTPPMTPSG ASSPIGGSMW PNQPTLAPPN  300
LQLPGSRLKA AINARDIDLD AELLGLDGNR QWRQQLLDDL SSLSILSYSD PQSPSPSPPH  360
PPLPL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.18e-94C3H family protein