PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027124257.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 192aa    MW: 22061.6 Da    PI: 7.9766
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027124257.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS149.53.2e-462190183374
            GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                     ++++e+l+ ++L+  p+Ea+aV + l l ++ +++ sl++    v+k++++++P vvvv+e ea+hns+ F  rf+e+l +ysa+fd+le  + r
  XP_027124257.1   2 VSDMEELKEDMLSKAPDEAVAVYSPLILRTMISKPESLRN----VIKVIRRMKPAVVVVTEVEANHNSPLFISRFTESLFFYSAFFDCLEDCMER 92 
                     57899***************************99999999....*************************************************** PP

            GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvS 371
                     ++e+r+++E  +lg+ i+n+v  eg++r  r+     Wre +++ G+ +v+ls++  +qa+++l+k++     ++ +  + +v+gWk+ p+ s++
  XP_027124257.1  93 NNEHRKTIEGIYLGEGIRNMVGSEGDKRCTRNVMIDVWREFFTRYGMVEVELSHSSLQQANMILKKFHkASSCNLINTGKGIVIGWKGTPIHSLT 187
                     ********************************************************************88889999******************* PP

            GRAS 372 aWr 374
                      W+
  XP_027124257.1 188 TWK 190
                     **8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MVSDMEELKE DMLSKAPDEA VAVYSPLILR TMISKPESLR NVIKVIRRMK PAVVVVTEVE  60
ANHNSPLFIS RFTESLFFYS AFFDCLEDCM ERNNEHRKTI EGIYLGEGIR NMVGSEGDKR  120
CTRNVMIDVW REFFTRYGMV EVELSHSSLQ QANMILKKFH KASSCNLINT GKGIVIGWKG  180
TPIHSLTTWK FM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.19e-34GRAS family protein