PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027124308.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 332aa MW: 38710.6 Da PI: 8.2515

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027124308.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.1	5.3e-22	26	113	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfYn+YA ++ Fsvrk++ +k ++g +t+r++ C keg + + k + + +rtr+ t+tgC ak+++ + + + k++v++l+leHnHel XP_027124308.1 26 KFYNKYAFKMDFSVRKDYLNKD-KDGVTTSRRYSCCKEGVKCKYKGD-VMPKRTRTPTKTGCGAKMVIVLLRgTMKYRVHDLVLEHNHEL 113 6***************9998.8999**********999998.9999************99998**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence
MDCSKLAKDG TPELGMEFNS EDDAYKFYNK YAFKMDFSVR KDYLNKDKDG VTTSRRYSCC 60 KEGVKCKYKG DVMPKRTRTP TKTGCGAKMV IVLLRGTMKY RVHDLVLEHN HELHIVQCSH 120 MMPSQRKISE AQGFQAEISE DAGLSLKQSH ELMGKEAGML IDYNFFGDVV TFDTSYKTNK 180 EYRPLGVFVS FNQHRQIVIF GAALMYDETI DSFKWVFGTF LESMCGKRPS TILTDQDHAM 240 VAALSIVMPE TFHGLCTFHI KYNFMKHLGN HYKKNSDLLY MFGACMYEFE EVEQFNRVWE 300 AMVKKHNLEN NEWFSGLYRI RDKWARCLMK ER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-44	FAR1 family protein