PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027124340.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family FAR1
Protein Properties Length: 185aa    MW: 21584.8 Da    PI: 8.6321
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027124340.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.67.3e-2226113189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                     kfYn+YA ++GFsv+k++ +k  +ng +t r++ C ke  +++ +++ +  +rtr+ t+tgC  k+ + +++ + k++v++l+leHnHel
  XP_027124340.1  26 KFYNKYAFKMGFSVCKDYLNKD-KNGVTTYRRYSCCKESVKRKYESD-VMPKRTRTLTKTGCGVKIIIVLHRgTMKYRVHDLVLEHNHEL 113
                     6******************998.8888************99999988.999******************9999****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    
MDCSKLVEDG TPELEMEFNS EDDAYKFYNK YAFKMGFSVC KDYLNKDKNG VTTYRRYSCC  60
KESVKRKYES DVMPKRTRTL TKTGCGVKII IVLHRGTMKY RVHDLVLEHN HELHIAQCSH  120
MMPLQRKVSE VQGFKIEISE DAGFSLKQSH ELVGKEVGEM GNMGYTRDDF KQYLCTKRER  180
SLKYG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-17FAR1 family protein