PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027124416.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 359aa    MW: 39507.4 Da    PI: 6.3518
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027124416.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.18.2e-1371113246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g++T+eE++l++++++  G++ W  Ia+ ++ gRt++++k+ w++
   XP_027124416.1  71 GSFTPEEEDLIIKLHAAIGSR-WPIIAQQLP-GRTDNDVKNVWNT 113
                      79*******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    
MVKPPYCDKI KMQTKEVHLT EEEDTKAHAY APKQGTGNWA AAMPKKSGAR RCGKSCRIRW  60
NGNQRPDPGH GSFTPEEEDL IIKLHAAIGS RWPIIAQQLP GRTDNDVKNV WNTKLKKKLS  120
AIGIDPVTHR PFSQILADYG NIGGFPKARN RSGCLSRDIK NAFVLKSEQS RGLPERSSHF  180
DSHFGTTISP LAVEPSKQHF MSNCNHISAA RSQSLELLSQ LQAITMVTEA STYTNTAAQI  240
PAECYSSSAS SSPESPPSAT NQAAASPSFS WCDFLLEDAF VPTTYIEEKE NEMKLPPTYD  300
PKSKEMKLSV AAEEEEVDIS AKTVEASSIS CGSFVEAMLE GENGMLSDFH GLLEDPFFY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.14e-55MYB family protein