PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027124567.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 196aa    MW: 22291 Da    PI: 10.5731
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027124567.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.6e-093180654
                    HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                    + +Er+RR r+N  ++eL +l+P+  + ++++ ls  +   ++  YI +L
  XP_027124567.1 31 KTVERNRRIRMNGLIHELTSLVPPqHFVPSKEQLSQRDQIDQVAAYIMQL 80
                    679*********************888888888**************999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MNCFPRDLLR FFGGFMENYS INDASGKLDR KTVERNRRIR MNGLIHELTS LVPPQHFVPS  60
KEQLSQRDQI DQVAAYIMQL KDRVEKLRKT KELVKRKIKT KGSNTGNSAI PGSRIRVVKI  120
REIGSSLEVV LVTGLGKNFG LHEVIIVLEE QGVEVVSISI STMDNRICHI LHAQVKVSRL  180
GVDTLTIYDR LQKLIN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.14e-22bHLH family protein