PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027125104.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 274aa    MW: 30513.8 Da    PI: 9.9509
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027125104.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.6e-14555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+e l+ +vk++G+g Wk I +        ++R+  ++k++w++
   XP_027125104.1  5 KQKWTPEEEEALKAGVKKHGTGKWKNILKDPXfapflTNRSNIDLKDKWRN 55
                     79************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MGNQKQKWTP EEEEALKAGV KKHGTGKWKN ILKDPXFAPF LTNRSNIDLK DKWRNVSIST  60
GQISKVKSMA PRIKQSTAIA LPITPISAVP ILVVEDDAVD DPSKSPQEGR NAPRYDSMIF  120
EAITDIKDPN GSDIGAIVRF IEQRHEVPQN FRRLLSSNLR RLVLKGKLEK VQNCFKMKDA  180
ASGAKPPMPK KKDVCSRPSQ NFGSVTSIEK LKDAAINAAY RIAEAENKSF VAAEAVREYE  240
RAVNIAEDTD SALLLVKDIY DRCSQGQMVL LSCR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-60MYB_related family protein