PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027125187.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ERF
Protein Properties Length: 249aa    MW: 26706.6 Da    PI: 4.4211
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027125187.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.1e-1960110155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  XP_027125187.1  60 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYSTAEMAARAHDVAALSIKG 110
                     68*****998.**********843...6***********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MSEPPSSCSS SLSSSSSSSS SSGSTQSNPS AELVKVSKEE EEEDRPPLKR QRDNSGNKHP  60
VYRGVRMRSW GKWVSEIREP RKKSRIWLGT YSTAEMAARA HDVAALSIKG NSAILNFPQL  120
VESLPRPVSL APRDVQAAAA KAAAMAELSS LCSSSSSSLS SSVSDSISSP STTTMTASSE  180
ELDEIIELPS LEESFDSSEL TLSDSVVDGW LFPPWWVPDA EFYGYLLGQA AVGDCELLKP  240
TSFGDIEMG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-49ERF family protein