PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027125313.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 274aa    MW: 31608.7 Da    PI: 8.8173
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027125313.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.43.5e-2016106199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv    d l s++l +p +f+++++g+   ++t tle ++grsW++     k ++ +++++GW++Fv++n L+  Df++F++ g s+f  +v 
  XP_027125313.1  16 FFKVY--TDQLCSSQLKIPPEFVKKFNGDV--PQTFTLEGPQGRSWQIVA--GKVDEYFYFQEGWQNFVEDNSLENDDFLTFSYGGCSRF--YVE 102
                     77888..8999999************8775..458***************..999999*************************9775666..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f k
  XP_027125313.1 103 IFGK 106
                     9875 PP
2B339.88.2e-131852591390
                     TT-EE--HHH...HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
              B3  13 sgrlvlpkkf..aeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                     ++ + +p++f  +++h     ++ +  l   + r+W+v +   k+++ + l +GW++Fvk+n Lk gD + F+++++ +++
  XP_027125313.1 185 NRYVKFPRDFgnVKKH----WKKGKGALLRVQAREWKVSI--AKSGRYFHLCTGWSSFVKENSLKIGDECNFEVIDNnDDG 259
                     3446788888333333....2223456777889*******..99999999999********************99874444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MKQNSKVLYS DESPMFFKVY TDQLCSSQLK IPPEFVKKFN GDVPQTFTLE GPQGRSWQIV  60
AGKVDEYFYF QEGWQNFVED NSLENDDFLT FSYGGCSRFY VEIFGKHGCR KEGAFTIWND  120
AMHRNENAVE QLHGKLNNTT QPMGRSLRSR TRGSCSEIGL AGKVQDNMRH HSGPFRVQLT  180
KTYTNRYVKF PRDFGNVKKH WKKGKGALLR VQAREWKVSI AKSGRYFHLC TGWSSFVKEN  240
SLKIGDECNF EVIDNNDDGI VLEVTMSRCP DKIE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.13e-18B3 family protein