PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027125347.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 575aa MW: 63868 Da PI: 6.6545

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027125347.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.5	1.5e-08	457	505	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +W+ E +lv++v+++G g+W+ I r Rt ++k++w+++l XP_027125347.1 457 PWSLTEVVKLVEGVARYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 505 8**************************9999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 575 aa Download sequence
METVVSMEAN EEAKVEDGIA KETGSEPVSL KHISDPDPDP EPDPVVYKLV RVDGEGRLVP 60 ATDEEVLVVE DLLEDEKPEH CAAECEQPIE CIKTEGCPLQ KNHVQSSEGI SSVQLDAAVD 120 LGKKIIQPEE IPCQMASASA GNSISQPMSA VGCPGSEGGL VENWSSRTDL ATTGKPDFSK 180 LKGEICLDNL TVKELQETFR ATFGRETFVK DKRWLKRRIS MGLTNSCDFS TTAFMIKDNE 240 VLKKDKKENR KKSAVYKDLV VGVASETAGG PTNGLNRLAD SNPNFDDRKT ESLLLEHDSV 300 REDPSLEQRT AKRVRKPTKR YIEEMSEEES RGSSGRLVSV VKSFEHRQSC SKACTMPVQN 360 VRLAGRPMVT RQDSLGGSGV QVPYVSRVRK GRPRENFMPF MIAAASENDN HHLERKEVEL 420 EKYVELKRMD SFEDNSDDNM GTVPASSGGM RRKHHRPWSL TEVVKLVEGV ARYGAGRWSE 480 IKRLAFASYS YRTSVDLKDK WRNLLRASFS QLPAEKGMHN ARKHASIPIP APILLRVREL 540 AEMQAQVPAN FSSSKFTGQS GGSDRSVHET RSGYL

Sequence ? help Back to Top

Protein Sequence Length: 575 aa Download sequence

METVVSMEAN EEAKVEDGIA KETGSEPVSL KHISDPDPDP EPDPVVYKLV RVDGEGRLVP  60
ATDEEVLVVE DLLEDEKPEH CAAECEQPIE CIKTEGCPLQ KNHVQSSEGI SSVQLDAAVD  120
LGKKIIQPEE IPCQMASASA GNSISQPMSA VGCPGSEGGL VENWSSRTDL ATTGKPDFSK  180
LKGEICLDNL TVKELQETFR ATFGRETFVK DKRWLKRRIS MGLTNSCDFS TTAFMIKDNE  240
VLKKDKKENR KKSAVYKDLV VGVASETAGG PTNGLNRLAD SNPNFDDRKT ESLLLEHDSV  300
REDPSLEQRT AKRVRKPTKR YIEEMSEEES RGSSGRLVSV VKSFEHRQSC SKACTMPVQN  360
VRLAGRPMVT RQDSLGGSGV QVPYVSRVRK GRPRENFMPF MIAAASENDN HHLERKEVEL  420
EKYVELKRMD SFEDNSDDNM GTVPASSGGM RRKHHRPWSL TEVVKLVEGV ARYGAGRWSE  480
IKRLAFASYS YRTSVDLKDK WRNLLRASFS QLPAEKGMHN ARKHASIPIP APILLRVREL  540
AEMQAQVPAN FSSSKFTGQS GGSDRSVHET RSGYL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	5e-99	MYB_related family protein