PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027125787.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 762aa MW: 84245.2 Da PI: 6.3965

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027125787.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.5	1.7e-21	108	163	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k XP_027125787.1 108 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLHPRQVKFWFQNRRTQIK 163 7999************************************************9877 PP
2	START	217.9	3.4e-68	280	502	3	206
HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS START 3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 ++a++el ++a++++p+W +s e++n+de+++kf+ +++ +++ea+r++g+v+ +l++lv+ ++d++ qW+e+++ ka+t++ XP_027125787.1 280 VNQALEELKQMATLGQPLWIRSLesgrEILNYDEYMKKFPFENAnnagpkRPIEASRETGIVFVELPRLVQCFMDVN-QWKEMFPgrvsKAATVD 373 678999*******************************9888899***************************.************* PP EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS START 84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171 v++ g g +qlm+aelq+l+p+vp R+++fvRy++q +a++w+ivdvS+d ++ ++s+ +++++pSg++ie+ksngh+kvtwveh + XP_027125787.1 374 VVCMGeganrdGLVQLMFAELQMLTPMVPtREVYFVRYSKQISADQWAIVDVSIDKVEDSV-DASLTKCRKRPSGCIIEDKSNGHCKVTWVEHLE 467 *******************************************************99.9**************************** PP --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++++++h+l+r +v+sgla+ga++w+ tlq qce+ XP_027125787.1 468 CQKSTVHSLYRAVVNSGLAFGARHWMTTLQLQCER 502 *******************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 762 aa Download sequence
MGVLDMSNPP PTSQTKDFFP SPALSLSLAG IFRRGAAAAN LEVEEGDEGS GGGGAAAAGG 60 GRREETVEIS SENSGPLRSR SDDMDDYEGE GEQDDGGEDD QNNKKKKRKK YHRHTAEQIR 120 EMEALFKESP HPDEKQRQQL SKQLGLHPRQ VKFWFQNRRT QIKAIQERHE NGLLKTELEK 180 LRDENKALRE TIQKASCPSC GFATSAKGPS TASDEQQLRI ENARLKAEVE KLRAALGRYT 240 PGTSPSNSSC SAGNEFENRS CLEFYSGIFG LEKSRIMEIV NQALEELKQM ATLGQPLWIR 300 SLESGREILN YDEYMKKFPF ENANNAGPKR PIEASRETGI VFVELPRLVQ CFMDVNQWKE 360 MFPGRVSKAA TVDVVCMGEG ANRDGLVQLM FAELQMLTPM VPTREVYFVR YSKQISADQW 420 AIVDVSIDKV EDSVDASLTK CRKRPSGCII EDKSNGHCKV TWVEHLECQK STVHSLYRAV 480 VNSGLAFGAR HWMTTLQLQC ERLAFFMATN VPTKDSSGVA TLAGRKSILK LAHRMTVSFC 540 RAPGASSYNT WSKITSKSGD DIRVASRKNL NDPGEPLGVI LCAVSSVWLP VSHHDLFDFL 600 RDESRRNEWD MMLNGAPAQS IANLAKGQDR GNAVTIQTIK TKDNSMWVLQ DSCTNAYESM 660 VVYAPVDISS MQSVMTGCDS SNIAVLPSGF SILLDGVESR PLVITSRLEE KSSEGGSLLT 720 IAFQILTSNS PTAKPSVESL ESVNTLISCT LQKIKASLNC ED

Sequence ? help Back to Top

Protein Sequence Length: 762 aa Download sequence

MGVLDMSNPP PTSQTKDFFP SPALSLSLAG IFRRGAAAAN LEVEEGDEGS GGGGAAAAGG  60
GRREETVEIS SENSGPLRSR SDDMDDYEGE GEQDDGGEDD QNNKKKKRKK YHRHTAEQIR  120
EMEALFKESP HPDEKQRQQL SKQLGLHPRQ VKFWFQNRRT QIKAIQERHE NGLLKTELEK  180
LRDENKALRE TIQKASCPSC GFATSAKGPS TASDEQQLRI ENARLKAEVE KLRAALGRYT  240
PGTSPSNSSC SAGNEFENRS CLEFYSGIFG LEKSRIMEIV NQALEELKQM ATLGQPLWIR  300
SLESGREILN YDEYMKKFPF ENANNAGPKR PIEASRETGI VFVELPRLVQ CFMDVNQWKE  360
MFPGRVSKAA TVDVVCMGEG ANRDGLVQLM FAELQMLTPM VPTREVYFVR YSKQISADQW  420
AIVDVSIDKV EDSVDASLTK CRKRPSGCII EDKSNGHCKV TWVEHLECQK STVHSLYRAV  480
VNSGLAFGAR HWMTTLQLQC ERLAFFMATN VPTKDSSGVA TLAGRKSILK LAHRMTVSFC  540
RAPGASSYNT WSKITSKSGD DIRVASRKNL NDPGEPLGVI LCAVSSVWLP VSHHDLFDFL  600
RDESRRNEWD MMLNGAPAQS IANLAKGQDR GNAVTIQTIK TKDNSMWVLQ DSCTNAYESM  660
VVYAPVDISS MQSVMTGCDS SNIAVLPSGF SILLDGVESR PLVITSRLEE KSSEGGSLLT  720
IAFQILTSNS PTAKPSVESL ESVNTLISCT LQKIKASLNC ED

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	109	KKKKRK
2	104	110	KKKKRKK
3	106	110	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	0.0	HD-ZIP family protein