PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027126720.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 271aa    MW: 29963.3 Da    PI: 5.0072
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027126720.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-165599147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE++++++a k++G   W+ I +++g ++t+ q++s+ qk+
   XP_027126720.1 55 REKWTEEEHQRFLEALKLYGRA-WRQIEEHVG-TKTAIQIRSHAQKF 99
                     789*****************88.*********.************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
MVAEAPDLIE GTSHDVSLGM RAHLETTAAQ TQALTEMGNG YAPKVRKPYT IKKQREKWTE  60
EEHQRFLEAL KLYGRAWRQI EEHVGTKTAI QIRSHAQKFF AKVARDSNEC EGSLNPIEIP  120
PPRPKKKPAH PYPRKVTDVT KAMLDDPHQP EQAPPFKRSG EERNSRSPTS VLSALGSDTS  180
GSPFSEPQRS HLSPVSYTTD DAHSAIVQLT ENDNECMTSD SSVEEEKEYG DAILLAASAT  240
QDDESAMELD LLTLGRACPA EDPAFEQAPA N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.14e-42MYB_related family protein