PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027126721.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 252aa    MW: 28040.1 Da    PI: 5.419
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027126721.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-163680147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE++++++a k++G   W+ I +++g ++t+ q++s+ qk+
   XP_027126721.1 36 REKWTEEEHQRFLEALKLYGRA-WRQIEEHVG-TKTAIQIRSHAQKF 80
                     789*****************88.*********.************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MRAHLETTAA QTQALTEMGN GYAPKVRKPY TIKKQREKWT EEEHQRFLEA LKLYGRAWRQ  60
IEEHVGTKTA IQIRSHAQKF FAKVARDSNE CEGSLNPIEI PPPRPKKKPA HPYPRKVTDV  120
TKAMLDDPHQ PEQAPPFKRS GEERNSRSPT SVLSALGSDT SGSPFSEPQR SHLSPVSYTT  180
DDAHSAIVQL TENDNECMTS DSSVEEEKEY GDAILLAASA TQDDESAMEL DLLTLGRACP  240
AEDPAFEQAP AN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.12e-42MYB_related family protein