PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027126922.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 211aa MW: 23864.2 Da PI: 10.1062

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027126922.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.7	1e-05	98	120	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_027126922.1 98 FICEICNKGFQRDQNLQLHRRGH 120 89*******************88 PP
2	zf-C2H2	14.3	0.00012	174	196	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_027126922.1 174 WKCDKCSKRYAVQSDWKAHSKTC 196 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MMKGLIVQQQ PAQPVMEENM SNLTSASNEA SVSSVNRNDN GSGGSIYPPQ QYFAPPNQTQ 60 VAQPQQAVKK KRNLPGNPDP DAEVLALSPK TLLATNRFIC EICNKGFQRD QNLQLHRRGH 120 NLPWKLKQRT NKEVKKKVYV CPEASCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCDKCS 180 KRYAVQSDWK AHSKTCGTRE YRCDCGTLFS R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	6e-99	C2H2 family protein