PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027127025.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 348aa MW: 38641.5 Da PI: 6.2463

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027127025.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.5	6.4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l++ ++ +G g+W+t ++ g+ R++k+c++rw +yl XP_027127025.1 14 KGPWTPEEDLKLIQHIQIHGAGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	53.5	5.4e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ XP_027127025.1 67 RGRFSFEEEEAIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MGRSPCCDKN GLKKGPWTPE EDLKLIQHIQ IHGAGNWRTL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEEAIIQ LHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHSPRV DLLDLSSILN SAQLNLSSLL GLQTLMNPEL LKFAATLISS SNQENPEILL 180 HKLQENQSLN AQMQNQMTPI NLQPTQNQFQ NTPQQVPLPV QSQATPAQGN MGDISMVSTN 240 LNGQMCQENL IASSASLLPS PIYSYGMTET TTADLSESSA FQSLNDSSNQ NSQNFGFESV 300 LSTPLSGSPL NSSSAFINSC NTEDERESYC SNLMKFGIPD SLDLADFM

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MGRSPCCDKN GLKKGPWTPE EDLKLIQHIQ IHGAGNWRTL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEEAIIQ LHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHSPRV DLLDLSSILN SAQLNLSSLL GLQTLMNPEL LKFAATLISS SNQENPEILL  180
HKLQENQSLN AQMQNQMTPI NLQPTQNQFQ NTPQQVPLPV QSQATPAQGN MGDISMVSTN  240
LNGQMCQENL IASSASLLPS PIYSYGMTET TTADLSESSA FQSLNDSSNQ NSQNFGFESV  300
LSTPLSGSPL NSSSAFINSC NTEDERESYC SNLMKFGIPD SLDLADFM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	3e-99	MYB family protein