PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027127235.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YB
Protein Properties Length: 209aa    MW: 22118.5 Da    PI: 6.5217
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027127235.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB184.39.6e-5823118297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedyveplk+yl+++r++ege
  XP_027127235.1  23 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQRFRDMEGE 117
                     89********************************************************************************************9 PP

           NF-YB  97 k 97 
                     k
  XP_027127235.1 118 K 118
                     7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MADSDNESGG NRDGNNLSES SPREQDRFLP IANVSRIMKK ALPANAKISK DAKETVQECV  60
SEFISFITGE ASDKCQREKR KTINGDDLLW AMTTLGFEDY VEPLKIYLQR FRDMEGEKSA  120
MAGRQEKEGG GGNGSVVNMG NSGGSYVGEG GGGMYGGATG LMMGTAHQQQ HHQGHVYGSG  180
VYNQMPGGGP GKVGSGYLGS GSSAPGRPR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.13e-78NF-YB family protein