PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027127357.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HB-other

Protein Properties

Length: 1037aa MW: 113712 Da PI: 6.2079

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027127357.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.3	4e-06	71	127	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++ F + ++++e +e+++ g+t +qV+ +F +Ra+ +k XP_027127357.1 71 KRPRDLLNPKAIKYMQSIFSVKDAITKKETREISALYGVTATQVREFFTVQRARVRK 127 799***************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1037 aa Download sequence
MELQLANENQ LELVVSNSPT SLQDLLDSQT DLFRGQIDEL ENIVLTQCQL TGVNPLSQEM 60 AAGALSIKIG KRPRDLLNPK AIKYMQSIFS VKDAITKKET REISALYGVT ATQVREFFTV 120 QRARVRKFVR LSREKSNRSS SCKEVLDGIP QGCDPNEPLT PVPLDSVGPT STEEGPTSLT 180 QNEVLPSADQ SDKYFLDNIF SLMRKEESFS GQVKLMEWIL QIQNSSVLYW FLNNGGVMIL 240 ATWLTQAALE EQTSVLRVIL KVLCHLPLQK ALPVHMSAIL QSVNSLRFYR ISDVSNRARV 300 LLSRWSKAFA RSQALRKSNG TKSAIDAQDE MLLKQSIHEV MGNESWDSKI DVLEDNSTLM 360 DESLGNFRKL ESQPAKLLTA SADDQNRKLI RGALASQNRE RRKVLLVEQP GQKSAGRTTQ 420 TARSTTAPQG RPLSADDIQK AKMRAQFMQS KYGKTNSISD ASPQMQLEGA NKSALSNTSI 480 LVPPSKAHTG TKIEETNKSG CSPVGVANPE DASVDKQNNC HSEEPPWKKC KRFQIPWQIP 540 PEIGISVSWR VGAGENSKEV EVQKKRIHRE RETVYKTFQE IPSDPKEPWD QEIDYDDSLT 600 AEIPIEQLPD GEFPGASVSP RENERTAGTS GNSSSLIAGG SMPEPDLELL AALLKNPELV 660 FALTSGQAGN LSNEETIKLL DMIKANEMNS LANITASSGK SKPEEKVEVS LPSPTPSSDP 720 VTSARKPDYA KNPFSQQKTT LTNEILGIPG TAAIRSQESV PASNVVQSHN LPTGAMVAEP 780 STTFPQLAQH AIPHALLSEE KLRASGLVQP QVLPATVLAP QQAATVQQLA QQMAPQVLGS 840 HEQRLLPLTS SLHHNIPAYA SNAQLKSSSE LLLNMNNTSL SRSPPLTNSM NGVAPAMVVN 900 PSSMSLVGSP LRPQTQMQPS YAPEAPLAHS WRPRPGLDPI SRQNNVTPDE YEAFVGASAR 960 APVARSSWEK NDLMVGPDFE SWSPENSPTR SHGYVPGWNV QEPMGLYIEA REMEMVLVVG 1020 CLNVEAPFFG TRLVSQV

Sequence ? help Back to Top

Protein Sequence Length: 1037 aa Download sequence

MELQLANENQ LELVVSNSPT SLQDLLDSQT DLFRGQIDEL ENIVLTQCQL TGVNPLSQEM  60
AAGALSIKIG KRPRDLLNPK AIKYMQSIFS VKDAITKKET REISALYGVT ATQVREFFTV  120
QRARVRKFVR LSREKSNRSS SCKEVLDGIP QGCDPNEPLT PVPLDSVGPT STEEGPTSLT  180
QNEVLPSADQ SDKYFLDNIF SLMRKEESFS GQVKLMEWIL QIQNSSVLYW FLNNGGVMIL  240
ATWLTQAALE EQTSVLRVIL KVLCHLPLQK ALPVHMSAIL QSVNSLRFYR ISDVSNRARV  300
LLSRWSKAFA RSQALRKSNG TKSAIDAQDE MLLKQSIHEV MGNESWDSKI DVLEDNSTLM  360
DESLGNFRKL ESQPAKLLTA SADDQNRKLI RGALASQNRE RRKVLLVEQP GQKSAGRTTQ  420
TARSTTAPQG RPLSADDIQK AKMRAQFMQS KYGKTNSISD ASPQMQLEGA NKSALSNTSI  480
LVPPSKAHTG TKIEETNKSG CSPVGVANPE DASVDKQNNC HSEEPPWKKC KRFQIPWQIP  540
PEIGISVSWR VGAGENSKEV EVQKKRIHRE RETVYKTFQE IPSDPKEPWD QEIDYDDSLT  600
AEIPIEQLPD GEFPGASVSP RENERTAGTS GNSSSLIAGG SMPEPDLELL AALLKNPELV  660
FALTSGQAGN LSNEETIKLL DMIKANEMNS LANITASSGK SKPEEKVEVS LPSPTPSSDP  720
VTSARKPDYA KNPFSQQKTT LTNEILGIPG TAAIRSQESV PASNVVQSHN LPTGAMVAEP  780
STTFPQLAQH AIPHALLSEE KLRASGLVQP QVLPATVLAP QQAATVQQLA QQMAPQVLGS  840
HEQRLLPLTS SLHHNIPAYA SNAQLKSSSE LLLNMNNTSL SRSPPLTNSM NGVAPAMVVN  900
PSSMSLVGSP LRPQTQMQPS YAPEAPLAHS WRPRPGLDPI SRQNNVTPDE YEAFVGASAR  960
APVARSSWEK NDLMVGPDFE SWSPENSPTR SHGYVPGWNV QEPMGLYIEA REMEMVLVVG  1020
CLNVEAPFFG TRLVSQV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-165	HB-other family protein