PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027127445.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family SBP
Protein Properties Length: 213aa    MW: 23798.5 Da    PI: 4.8111
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027127445.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP71.41.7e-22105154251
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEE CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhe 51 
                     C++e+C+adl++ k+yh+rhkvCe h+ka+vv+v+gl+qrfCqqCsr  +
  XP_027127445.1 105 CRAENCKADLTDSKSYHKRHKVCEYHAKAEVVVVEGLKQRFCQQCSRINK 154
                     9**********************************************865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MEPHMHHLRQ SSSAVHSPFA PTKKVTEEAE TDTEEEEEEE EEVEEEEEEE EDGNGGFGAE  60
IEVEPELKKK RMNFDEGPRK RGSRTAAEGA GGGGGAVAVA PPPGCRAENC KADLTDSKSY  120
HKRHKVCEYH AKAEVVVVEG LKQRFCQQCS RINKCQLMGF WLFSASYLPL DNLLLLLSRK  180
FSNLQGPRLG YIVYPDSTTS QNLMRQREVV ADA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.23e-20SBP family protein