PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027127446.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family SBP
Protein Properties Length: 176aa    MW: 19518.4 Da    PI: 4.591
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027127446.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP75.96.4e-24105153250
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEE CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfh 50 
                     C++e+C+adl++ k+yh+rhkvCe h+ka+vv+v+gl+qrfCqqCsr  
  XP_027127446.1 105 CRAENCKADLTDSKSYHKRHKVCEYHAKAEVVVVEGLKQRFCQQCSRLG 153
                     9**********************************************75 PP
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    
MEPHMHHLRQ SSSAVHSPFA PTKKVTEEAE TDTEEEEEEE EEVEEEEEEE EDGNGGFGAE  60
IEVEPELKKK RMNFDEGPRK RGSRTAAEGA GGGGGAVAVA PPPGCRAENC KADLTDSKSY  120
HKRHKVCEYH AKAEVVVVEG LKQRFCQQCS RLGYIVYPDS TTSQNLMRQR EVVADA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.22e-19SBP family protein