PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027127570.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 170aa MW: 19665.3 Da PI: 10.0386

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027127570.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.1	2.4e-19	5	52	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+l+++v+++G g+W tI ++ g+gRt k+c++rw ++l XP_027127570.1 5 KGPWSAEEDERLKKCVEEHGIGNWITIEKYSGLGRTSKSCRLRWTNHL 52 79*******************************************996 PP
2	Myb_DNA-binding	50.7	4e-16	58	100	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +g++T++E+ l v+++k++G++ W+ I+++++ gRt++++k++w+ XP_027127570.1 58 KGSFTKQEERLVVKLHKKYGNK-WSYISSKLP-GRTDNEIKNFWH 100 799*****************.*****.*********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence
MVVKKGPWSA EEDERLKKCV EEHGIGNWIT IEKYSGLGRT SKSCRLRWTN HLRPNLKKGS 60 FTKQEERLVV KLHKKYGNKW SYISSKLPGR TDNEIKNFWH GRVRRCRRKF LPIYPEDIED 120 GGSRGDGLDT DGKNNINDND HNSSAKNVME CIKSRAPFSP NSNICLETYP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26930.1	5e-49	MYB family protein