PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027127729.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 819aa MW: 94954.7 Da PI: 8.8981

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027127729.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.7	2.5e-20	86	176	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn YAk GF +rks+ k+ +g r++vC +eg+r+e+ + ++++r+ ++ trtgC a+++vk + + k++vt++ eHnH+la XP_027127729.1 86 EFYNLYAKLSGFGIRKSNAKRD-ADGISRFRKWVCCCEGYRNEKWFNyEDRKREAKPITRTGCGACFRVKYDIeSVKYVVTRFIMEHNHPLA 176 6**************98887.8998999********9988867889999************98899************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 819 aa Download sequence
MGQDGALKTH DMVQETENRK MGMDDCGRLR SFDLNQEPEC DRDTFIEESG GSIGGHEDEE 60 ADELVGAIGV DDVMKLTFDT EKEAGEFYNL YAKLSGFGIR KSNAKRDADG ISRFRKWVCC 120 CEGYRNEKWF NYEDRKREAK PITRTGCGAC FRVKYDIESV KYVVTRFIME HNHPLASATS 180 VQHIRSHRKV SDAEYAQAKS LKLVGARICQ IMKHFVIKAG GYSNVGFCIK DLYNRMDEER 240 RKDIFNGDAE GALGFLAAKK DVDDMFFYKY HVDNEGRLTR LFWADSKSHA DFSVFGDVLV 300 FDTTYKTNKY HKPLVVLAGV NNHLNSTVFG CALLSDERIE TYEWVLSTFV ETMKGRKPVA 360 VMTDRDSAMR RAIKNLLPDA CHRLCSWHLY RNVQSNIRCE EFNNRLYNLM TRKCSTLEFE 420 DRWARLVNEC GVVENEWVKK LYRRRRLWAE AYLRGHFFAA WLRHTESKAV HTSENTKPVL 480 TTILPELEGG AAEVFTRNVF FMLRKHLNRQ GLLISEGWSE DGGSRTYYYS KYGGHEISWR 540 VDYDRSMKKL ICSCMKFESK GIPCAHMFRV MVVVGMNRIP EACISKRWIK GVYCTNNRMK 600 AFVVDEQLTQ MARYGTLKSS CNTMCYYASY MDDAFNNLQQ MFDKHSVDLK EKWIDRGYGG 660 DGFAMDSRVR NDRSRRTFGL LDPRVSRSKG DHKHAEAKKK RKCGHCRCEM QRLKEMVWLC 720 MEVAAITTDR GHAQKDHQMH DCQGCVISTA VANSATALVN RREIKWKRML RKISSWDRRF 780 PKWLLGNQLQ LPNFCKLVSY AAAMNYFYDM GYLFLSLLS

Sequence ? help Back to Top

Protein Sequence Length: 819 aa Download sequence

MGQDGALKTH DMVQETENRK MGMDDCGRLR SFDLNQEPEC DRDTFIEESG GSIGGHEDEE  60
ADELVGAIGV DDVMKLTFDT EKEAGEFYNL YAKLSGFGIR KSNAKRDADG ISRFRKWVCC  120
CEGYRNEKWF NYEDRKREAK PITRTGCGAC FRVKYDIESV KYVVTRFIME HNHPLASATS  180
VQHIRSHRKV SDAEYAQAKS LKLVGARICQ IMKHFVIKAG GYSNVGFCIK DLYNRMDEER  240
RKDIFNGDAE GALGFLAAKK DVDDMFFYKY HVDNEGRLTR LFWADSKSHA DFSVFGDVLV  300
FDTTYKTNKY HKPLVVLAGV NNHLNSTVFG CALLSDERIE TYEWVLSTFV ETMKGRKPVA  360
VMTDRDSAMR RAIKNLLPDA CHRLCSWHLY RNVQSNIRCE EFNNRLYNLM TRKCSTLEFE  420
DRWARLVNEC GVVENEWVKK LYRRRRLWAE AYLRGHFFAA WLRHTESKAV HTSENTKPVL  480
TTILPELEGG AAEVFTRNVF FMLRKHLNRQ GLLISEGWSE DGGSRTYYYS KYGGHEISWR  540
VDYDRSMKKL ICSCMKFESK GIPCAHMFRV MVVVGMNRIP EACISKRWIK GVYCTNNRMK  600
AFVVDEQLTQ MARYGTLKSS CNTMCYYASY MDDAFNNLQQ MFDKHSVDLK EKWIDRGYGG  660
DGFAMDSRVR NDRSRRTFGL LDPRVSRSKG DHKHAEAKKK RKCGHCRCEM QRLKEMVWLC  720
MEVAAITTDR GHAQKDHQMH DCQGCVISTA VANSATALVN RREIKWKRML RKISSWDRRF  780
PKWLLGNQLQ LPNFCKLVSY AAAMNYFYDM GYLFLSLLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	442	447	YRRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-82	FAR1 family protein