PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027127779.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 588aa MW: 68679.7 Da PI: 8.2392

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027127779.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.1	1.3e-22	26	113	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfYn+Y ++GFsvrk++ +k ++g +t+r++ C keg +++ + + + +rtra t+tgC ak+ + + + + k++v++++leHnHel XP_027127779.1 26 KFYNKYTFKMGFSVRKDYVNKD-KDGVTTSRRYSCCKEGVKRKYEGD-VMPKRTRAPTKTGCGAKMIIVLLRaTMKYRVHDFVLEHNHEL 113 6***************9998.8999************9999.999***********9998887**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence
MDCSKLAEDR TPELGMEFNS EEDAYKFYNK YTFKMGFSVR KDYVNKDKDG VTTSRRYSCC 60 KEGVKRKYEG DVMPKRTRAP TKTGCGAKMI IVLLRATMKY RVHDFVLEHN HELHIAQCSH 120 MMPSQRKVSE AQGFQAEISE DAGLSLKQSH ELMGNEAAGM ENVGYTREDL KRYLRTRRER 180 SLKYGEAGSM LNYFQEQTLE NPSFFHAVQL DCEEQITNIF WADAGMLIDY NFFGDVVTFD 240 TTYKTNKEYR SLGVFVGFNQ HRQIVIFGAA LMYDETIDSF KWVFGTFLEA MFGKRPSTIL 300 TDQDHAMAAA LSVVMPETFH GLCTFHIRRN FMKHLGNHYK ENSDLPYMFG ACMYEFEEVE 360 QFNRVWEAMV KKHNLENNEW LSGLYRIRDK WARCMMKERW TAGMRSTQLS ESLNAAIKNH 420 LKLDHDLVQF FRHFNRVVDE KRHNELIAEY EMRQKLPMVG LRQTPMFVHA SETYSPTIFV 480 AFQNEYGEST AMVILRQQDA GMFVEFTVMR YDGGVERIVV FNRNDVSVRC SCKKYENEGI 540 LCRHALKVFD TVGIKIIPPE YVKRRWTKRA RAGDCLIGKD GKLWLIQK

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence

MDCSKLAEDR TPELGMEFNS EEDAYKFYNK YTFKMGFSVR KDYVNKDKDG VTTSRRYSCC  60
KEGVKRKYEG DVMPKRTRAP TKTGCGAKMI IVLLRATMKY RVHDFVLEHN HELHIAQCSH  120
MMPSQRKVSE AQGFQAEISE DAGLSLKQSH ELMGNEAAGM ENVGYTREDL KRYLRTRRER  180
SLKYGEAGSM LNYFQEQTLE NPSFFHAVQL DCEEQITNIF WADAGMLIDY NFFGDVVTFD  240
TTYKTNKEYR SLGVFVGFNQ HRQIVIFGAA LMYDETIDSF KWVFGTFLEA MFGKRPSTIL  300
TDQDHAMAAA LSVVMPETFH GLCTFHIRRN FMKHLGNHYK ENSDLPYMFG ACMYEFEEVE  360
QFNRVWEAMV KKHNLENNEW LSGLYRIRDK WARCMMKERW TAGMRSTQLS ESLNAAIKNH  420
LKLDHDLVQF FRHFNRVVDE KRHNELIAEY EMRQKLPMVG LRQTPMFVHA SETYSPTIFV  480
AFQNEYGEST AMVILRQQDA GMFVEFTVMR YDGGVERIVV FNRNDVSVRC SCKKYENEGI  540
LCRHALKVFD TVGIKIIPPE YVKRRWTKRA RAGDCLIGKD GKLWLIQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-107	FAR1 family protein