PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027148759.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 878aa MW: 97206.2 Da PI: 6.5667

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027148759.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.5	1.5e-15	135	181	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq XP_027148759.1 135 VHNLSEKRRRSRINEKLKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 181 5***********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 878 aa Download sequence
MSDPYGTDDR SSFEPDSEPG GPPEPEDMNV FLHNLFQNSP ATAGSSSLYR GSASMINSSS 60 AASFDFSDPG GFFAGEVKGR LEKTFSLAAA GDCGAVTSSM DRGEFSGANK GLEASDAAIN 120 EAQPRCTKRS RSAEVHNLSE KRRRSRINEK LKALQNLIPN SNKTDKASML DEAIEYLKQL 180 QLQVQMLTIR NGLSFHPNYV SGSLQPMQLP MDFNEGDVMP NTSGGKHTLS SNQEVAMQAA 240 FGVSNPKISS QQLAIASMTN NSSSAFSFGL QSSAQNYPGV PNYLASAKDL CREDTLMQFP 300 LDISRSGNNS SSGVSSYKEK QNPYNYAPQS SFTILTFNNS DVLSWVLREI EAEMSDNKIN 360 TTNRAAFLND ELSKRTSIFG LRLWVVLGVC VGAAIVLFLF IISIWFTSRR HSKKSRLASQ 420 KNPTIPNVSK EIQEIRIDPN RPRPEQDTKL LLLPAPGPDP LPEPDHVVED ENANGHRRIH 480 VEIGKGHRIA YPERVGPGSG GSGQGSGEAR SGDQVGIAVP EVSHLGWGHW YTLRELEEST 540 NGFADENVIG EGGYGIVYKG VLEDNTKVAV KNLLNNRGQA EREFKVEVEA IGRVRHKNLV 600 RLLGYCVEGA HRMLVYEYVD NGNLEQWLHG DVGPYSPLTW EIRMNIILGT AKGLTYLHEG 660 LEPKVVHRDI KSSNILLDKQ WNPKVSDFGL AKLLGSERSY ITTRVMGTFG YVAPEYASTG 720 MLNERSDVYS FGILLMEIIT GRNPVDYSRP QGEVNLVDWL KTMVSNRNAE GVLDPKLPEQ 780 PSSRALKRAL LVALRCVDPN SQKRPKMGHV IHMLEADDFP FRDERSRAGK EHARTNRDSL 840 KERMMEKRMI ESGDSSGYES SVQTNRMLLR KQETDEEQ

Sequence ? help Back to Top

Protein Sequence Length: 878 aa Download sequence

MSDPYGTDDR SSFEPDSEPG GPPEPEDMNV FLHNLFQNSP ATAGSSSLYR GSASMINSSS  60
AASFDFSDPG GFFAGEVKGR LEKTFSLAAA GDCGAVTSSM DRGEFSGANK GLEASDAAIN  120
EAQPRCTKRS RSAEVHNLSE KRRRSRINEK LKALQNLIPN SNKTDKASML DEAIEYLKQL  180
QLQVQMLTIR NGLSFHPNYV SGSLQPMQLP MDFNEGDVMP NTSGGKHTLS SNQEVAMQAA  240
FGVSNPKISS QQLAIASMTN NSSSAFSFGL QSSAQNYPGV PNYLASAKDL CREDTLMQFP  300
LDISRSGNNS SSGVSSYKEK QNPYNYAPQS SFTILTFNNS DVLSWVLREI EAEMSDNKIN  360
TTNRAAFLND ELSKRTSIFG LRLWVVLGVC VGAAIVLFLF IISIWFTSRR HSKKSRLASQ  420
KNPTIPNVSK EIQEIRIDPN RPRPEQDTKL LLLPAPGPDP LPEPDHVVED ENANGHRRIH  480
VEIGKGHRIA YPERVGPGSG GSGQGSGEAR SGDQVGIAVP EVSHLGWGHW YTLRELEEST  540
NGFADENVIG EGGYGIVYKG VLEDNTKVAV KNLLNNRGQA EREFKVEVEA IGRVRHKNLV  600
RLLGYCVEGA HRMLVYEYVD NGNLEQWLHG DVGPYSPLTW EIRMNIILGT AKGLTYLHEG  660
LEPKVVHRDI KSSNILLDKQ WNPKVSDFGL AKLLGSERSY ITTRVMGTFG YVAPEYASTG  720
MLNERSDVYS FGILLMEIIT GRNPVDYSRP QGEVNLVDWL KTMVSNRNAE GVLDPKLPEQ  780
PSSRALKRAL LVALRCVDPN SQKRPKMGHV IHMLEADDFP FRDERSRAGK EHARTNRDSL  840
KERMMEKRMI ESGDSSGYES SVQTNRMLLR KQETDEEQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	1e-34	bHLH family protein