PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027149419.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GATA
Protein Properties Length: 373aa    MW: 40871.6 Da    PI: 5.0493
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027149419.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.64.8e-15226262135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+ +  Tp +Rrgp g++tLCnaCGl+++ kg+
  XP_027149419.1 226 CHHCGVGEnsTPAMRRGPTGPRTLCNACGLMWANKGT 262
                     *****99889************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    
MAGIPKAMKA RHYDDGGDDR VDDDEEEEEE EEEEDEDEDE DDDGGGDDVM SDVNEVHLNS  60
VGNHNHRHKQ QQQHQHHSHR AGGGGQVVAT RTSELTLAFE GEVYVFPAVT PQKVQAVLLL  120
LGGRDVPTSV PDNDVIFDSN RKGVDDTLKR SNVSKRIASL VRFREKRKER CFDKKIRYSI  180
RKEVAQRMHR KNGQFASVKD GSGSSNWVSS KNNLQGDDKS HPETVCHHCG VGENSTPAMR  240
RGPTGPRTLC NACGLMWANK GTLRDLSKGG RTSSLHPVEL GTPCDIKPLV LKGENSSGNQ  300
YEHATPSKAL TDGTDKYSAN PDEGHLRGSG EDLTNHVPVG IPASSGDLNE QEGLLDFTST  360
SETEVDIPTN FGE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146151DTLKRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-70GATA family protein