PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027149479.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 512aa    MW: 56379.6 Da    PI: 6.0708
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027149479.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS334.81.6e-1021225061374
            GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdg.dpmqRlaayfteALaarlar...svselykal......ppsetsekn....sseela 79 
                     lv+lL+++Aea++   +++ela+ +L rl+el+sp++ ++m+RlaayfteAL+  l +      ++y +       p  +    +    ++++la
  XP_027149479.1 122 LVHLLMAAAEALTGvnKSHELARVILVRLKELVSPNDgSNMERLAAYFTEALHGLLEGaggAAAGVYGKHfsghhgPHAK----DdhhhQTDVLA 212
                     68**********98446677************8887669*****************983222334442221110112333....1345699**** PP

            GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAee 171
                     a++l++++sP++kf+h+taNqaIleav +++rvHi+D+di++G+QW++L+qaL sR++gp  +lRiT++++  s   s ++++etg+rL+ fA++
  XP_027149479.1 213 AFQLLQDMSPYVKFGHFTANQAILEAVVHDRRVHIVDYDIMEGIQWASLMQALMSRKDGPStHLRITALSRGGSArrSFTTIQETGRRLSAFAAS 307
                     *********************************************************66555*********77778899**************** PP

            GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyys 265
                     +g pf+f+    ++ e++++++L++ +gEal++n++l+l ++  +    ++ + ++L+  k+l+P+++++ve+e+    +e F+ +f+++l++ys
  XP_027149479.1 308 IGQPFSFHQCRLDSDEAFRPSSLKLVRGEALIINCMLHLPHFSYR---ASESIASFLSGAKTLNPRLITLVEEEVGPiANEGFVGKFIDSLHHYS 399
                     *********9999**************************999733...3333568*******************9988***************** PP

            GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslv 359
                     a++dslea++p + ++r+ vEr++lg++i   +a   ++  + + + ++W er+ ++GF+p+++s  + +qakll+  ++ dgyrvee   + lv
  XP_027149479.1 400 AIYDSLEAGFPLQGRARVLVERVFLGPRIAGSIARIYRA--QGEAEGGSWGERMASMGFRPISVSFANHCQAKLLVGLFN-DGYRVEELaCNKLV 491
                     ***********************************9998..556668*********************************.******98479999 PP

            GRAS 360 lgWkdrpLvsvSaWr 374
                     lgWk+r+L+s+S+W+
  XP_027149479.1 492 LGWKSRRLLSASVWT 506
                     **************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    
MAVVFRNTMM DVDFPCYSTT TTTTATTTAT TTTTTTATSS DDNCCDWNDW SSVVDWDEIS  60
CDGDHMKDDG FHDLLETMTD EIVTVHHPAW ALPDRRSSTV SPETVMMDSE DDGGEDFKGL  120
RLVHLLMAAA EALTGVNKSH ELARVILVRL KELVSPNDGS NMERLAAYFT EALHGLLEGA  180
GGAAAGVYGK HFSGHHGPHA KDDHHHQTDV LAAFQLLQDM SPYVKFGHFT ANQAILEAVV  240
HDRRVHIVDY DIMEGIQWAS LMQALMSRKD GPSTHLRITA LSRGGSARRS FTTIQETGRR  300
LSAFAASIGQ PFSFHQCRLD SDEAFRPSSL KLVRGEALII NCMLHLPHFS YRASESIASF  360
LSGAKTLNPR LITLVEEEVG PIANEGFVGK FIDSLHHYSA IYDSLEAGFP LQGRARVLVE  420
RVFLGPRIAG SIARIYRAQG EAEGGSWGER MASMGFRPIS VSFANHCQAK LLVGLFNDGY  480
RVEELACNKL VLGWKSRRLL SASVWTSPDN DM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-159GRAS family protein