PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027149634.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 236aa    MW: 27142.3 Da    PI: 10.3535
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027149634.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.3e-18132221299
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     +k +++s+v+   +l lp +f ++h  +k ++ t+tl de+g +W+  +  rk++    l++GWk+F  +++L +gD +vF+l++ + f  +v++
  XP_027149634.1 132 VKPMLQSHVTGGFWLGLPSHFSKRHL-PK-RDDTVTLVDEQGDKWRTIYLARKTG----LSGGWKKFSVDHDLVDGDALVFQLIQPTVF--KVHI 218
                     68999*****************9994.33.5569***************656665....*************************98888..8988 PP

                     E-S CS
              B3  97 frk 99 
                     +r+
  XP_027149634.1 219 IRE 221
                     876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MVVSKVKYEQ LRQQRMEENK KKLEQLHLPL LSQALQKAAL SPKTSPVMKK VKPRTIRTEL  60
VPVRRSGRFT NKPAPQYKEV VFYERVQLPR STVHPKRDLS NRVYASDEAR AWAIEKAEKL  120
ESTLESGYPT LVKPMLQSHV TGGFWLGLPS HFSKRHLPKR DDTVTLVDEQ GDKWRTIYLA  180
RKTGLSGGWK KFSVDHDLVD GDALVFQLIQ PTVFKVHIIR ENGFTEENSH EAICDS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-67B3 family protein