PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027149661.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 305aa MW: 35262.9 Da PI: 4.9391

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027149661.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.5	2.7e-19	49	99	6	56
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ +q+++Le+ Fe +++++ e++ +LA++lgL+ rqV +WFqNrRa++k XP_027149661.1 49 RLRIDQVQALERIFEVDNKLDPERKIKLAQELGLQPRQVAIWFQNRRARWK 99 45668*********************************************9 PP
2	HD-ZIP_I/II	121.2	5.1e-39	46	136	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kk+rl +qv++LE+ Fe ++kL+perK +la+eLglqprqva+WFqnrRAR+ktkqlE+dy+ Lk++y+al+ + +++e+e+e L +el+ XP_027149661.1 46 KKKRLRIDQVQALERIFEVDNKLDPERKIKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYHLLKANYEALQLNYSKVEQEKEGLVAELR 136 9*************************************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence
MNRFNYFDSS ENNTRENVGY SNEFQAMLDG LDDEDSIEEY NCSNGKKKRL RIDQVQALER 60 IFEVDNKLDP ERKIKLAQEL GLQPRQVAIW FQNRRARWKT KQLERDYHLL KANYEALQLN 120 YSKVEQEKEG LVAELRGLRE KLGEDNTETN HSIEKVATLQ SSPKMASEKC NDSSEFGPTH 180 ANHEVYTNLH LSSETKRILD LKDGLSDSDS SGVLNEDSNN LNVQPLVSKL SSCNPTFNGL 240 DQYAFSLSAP VYHPHLLDSR VKDYQQQFMK MQDQNHSSYA DDSCNIFSVD QAPPLYWYFS 300 DPRNQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	46	75	KKKRLRIDQVQALERIFEVDNKLDPERKIK
2	94	102	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	2e-44	HD-ZIP family protein