PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027149777.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 276aa MW: 31043.1 Da PI: 8.1595

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027149777.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.6	2.5e-19	126	180	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq +Le+ F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k XP_027149777.1 126 RKKLRLTKEQSLILEDSFKEHSTLNPKQKQALANRLNLRPRQVEVWFQNRRARTK 180 78889************************************************98 PP
2	HD-ZIP_I/II	122.1	2.8e-39	126	214	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+keq+ +LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++lkeen+rL+ke +eL+ + XP_027149777.1 126 RKKLRLTKEQSLILEDSFKEHSTLNPKQKQALANRLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLKEENRRLNKELQELK-A 214 69*************************************************************************************9.4 PP

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence
MVFDINICNT RLSLGLGSTF TTRNNDQNHL PQFDHHEEFK NKSSPKIDHF SLTLGLPSEL 60 ETISVDAGAK GDQSCNIHGQ QASSVSAVSS FSNSSVKRER EASVEEVEEE RVSPKICEDQ 120 DEEGPRKKLR LTKEQSLILE DSFKEHSTLN PKQKQALANR LNLRPRQVEV WFQNRRARTK 180 LKQTEVDCEL LKKCCETLKE ENRRLNKELQ ELKAMKLAAP PPLYMQIPAA TLSMCPSCER 240 ISSGGHVGEK SSKISFSIGA KPRYYSPFAN HPSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	175	183	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	3e-78	HD-ZIP family protein