PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027149787.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 198aa MW: 20976.8 Da PI: 4.7582

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027149787.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98	9.8e-31	2	104	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlrr+C+++C+l+p++ p++q++++ +v k+FG+s ++++++a+p+++++++++sl+yeA+ r+ +Pv+Gavg+++++++ ++++ XP_027149787.1 2 SCNGCRVLRRGCSDKCALRPCLgwiptPQAQANATLFVSKFFGRSDLMSFITAVPDSKKPALFQSLLYEACGRTVNPVSGAVGLLSTGNWPVCEA 96 6**********************9999**************************************************************** PP DUF260 91 kaelallk 98 ++e++l++ XP_027149787.1 97 AVETVLAG 104 *9998775 PP

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence
MSCNGCRVLR RGCSDKCALR PCLGWIPTPQ AQANATLFVS KFFGRSDLMS FITAVPDSKK 60 PALFQSLLYE ACGRTVNPVS GAVGLLSTGN WPVCEAAVET VLAGGTLRPM NGVGVLSPDS 120 NEASEAFCNS GGLWRVQPPF FMHGSDGDEM MVEFESDQNM SASASFRSSE ASDVWGSFGS 180 CGIEGVGGKE PKLLNLFV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	1e-60	LBD family protein