PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027150051.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 224aa    MW: 25034.6 Da    PI: 8.1152
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027150051.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.51.3e-26959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krie+++ rqvtfskRrng+lKKA+ELS+LCd+e+a+++fs+ g+l  +s+
  XP_027150051.1  9 KRIESTTSRQVTFSKRRNGVLKKAYELSTLCDVEIALLMFSPAGRLTQFST 59
                    79***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MGRAKLQMKR IESTTSRQVT FSKRRNGVLK KAYELSTLCD VEIALLMFSP AGRLTQFSTQ  60
KRMFEPDLGS MTSMEELESC EKLLEDLLNS VTNRKICEQL VSNLVRSYHP KILELNVTLK  120
KVFLMQGTVL SSLKEGQSSQ RSAEVLNWLP DGSCKGHTLD SPIVNVDTRD DISTSCVPLE  180
ESSCNLNLGN MKDGKFQTSV NQKVPAWAHS YNSADISGYL SWTG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.12e-26MIKC_MADS family protein