PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027150624.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 210aa    MW: 24545.2 Da    PI: 9.2278
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027150624.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF901.3e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien+ nrqvt+skRr+gi+KKA+E+ vLCda+v++iif+++gk++ey+s
  XP_027150624.1  9 KRIENSNNRQVTYSKRRTGIMKKAKEITVLCDAKVSLIIFGTSGKMHEYIS 59
                    79***********************************************86 PP
2K-box79.77.1e-2771167197
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yq+s+gk+l++ak+e+l++e++++kke++++q e+Rhl+Ged++sL++keL+ Le++Le++l   R+k++e++++  ++  + e+e+++ +   +
  XP_027150624.1  71 YQRSTGKKLWDAKHENLSNEIDRVKKENDSMQIELRHLKGEDITSLNYKELMILEDALENGLAGLREKQSEIIKMIRKTGEMLEDENKQLQYIWH 165
                     789999*******************************************************************9999999999998888877666 PP

           K-box  96 kk 97 
                     ++
  XP_027150624.1 166 QQ 167
                     65 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MGRGKIEIKR IENSNNRQVT YSKRRTGIMK KAKEITVLCD AKVSLIIFGT SGKMHEYISP  60
STNLVEMLDA YQRSTGKKLW DAKHENLSNE IDRVKKENDS MQIELRHLKG EDITSLNYKE  120
LMILEDALEN GLAGLREKQS EIIKMIRKTG EMLEDENKQL QYIWHQQEMA NMKGAIGERD  180
DVYQRVRDYP SQMPFAFRVQ PMQPNLHERI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-87MIKC_MADS family protein