PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027150862.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 224aa    MW: 25693.9 Da    PI: 10.2478
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027150862.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.82.4e-171050242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    +i n+s r+ t+ kR++g+lKK +ELS+LC+++++ i++s+
  XP_027150862.1 10 FITNDSARKATYKKRKKGLLKKVSELSTLCGVDACAIVYSP 50
                    89**************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MTRKKVKLAF ITNDSARKAT YKKRKKGLLK KVSELSTLCG VDACAIVYSP YESEPEVWPG  60
PVGVQLVISR FKRMPEMEQS KKMVNQEGFI KHRIAKANEQ LRKQCKENRE KEMTEVMYQC  120
LTGRGIQDLM MADLHDLGWL VDQNVKKIEK RIEFVKKMAP PQQAKPPTTP PGEPSMPVDG  180
IPRTGWFNQW MNNPGQNKGS GSGNEMTMKF HENHNFMWSS AFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAFITNDSARKATYKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-58M-type_MADS family protein