PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027151194.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MIKC_MADS

Protein Properties

Length: 178aa MW: 20533.5 Da PI: 10.1441

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027151194.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.3	1.5e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+i+fs++gklye++s XP_027151194.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIVFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	94.8	1.4e-31	80	172	7	99
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++++++ +s +qe+ kLk+++e Lq++qRhllGedL +L k+L qLe+qL+ sl++iRs+K++++l+q+++lq+ke++l e nkaLr+kl+ XP_027151194.1 80 MNQSSKDPQSDYQEYLKLKARVEVLQQSQRHLLGEDLAQLGAKQLDQLERQLDASLRQIRSTKTQHMLDQLSDLQQKERSLMEVNKALRNKLQ 172 45788999**********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIVFSN RGKLYEFCSS 60 SSMSKTLERY HRCSYADAGM NQSSKDPQSD YQEYLKLKAR VEVLQQSQRH LLGEDLAQLG 120 AKQLDQLERQ LDASLRQIRS TKTQHMLDQL SDLQQKERSL MEVNKALRNK LQHGGSRC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	3e-87	MIKC_MADS family protein