PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027151295.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family BBR-BPC
Protein Properties Length: 282aa    MW: 30986.4 Da    PI: 10.1454
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027151295.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind353.83.7e-10812821301
       GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkll 82 
                     mdddg + rn+gyyep+ slk nl+lqlmss+a+rd+k+    r++ + + + ++++++rd         m++  rd+++++        ++k++
  XP_027151295.1   1 MDDDGLNMRNWGYYEPS-SLKGNLALQLMSSVADRDTKPflsgRDSGV-MGAANGVYHPRDylisgapdhMDY-VRDSWINH--------RDKFV 84 
                     9*****99********9.***********************9888888.999*********************.9******9........78999 PP

       GAGA_bind  83 alllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177
                     ++ +          ++ +vl++t+ ++++q+l+     ++       +k      +e + + ke  + kkr+  ++pk++k+kk+kk+++++k++
  XP_027151295.1  85 HMFPG--------NPYNTVLPETSGTHQMQMLQ-----QPE-----PSKDARVS-VEDVGVRKEPGSAKKRAAVSVPKAPKSKKPKKNPAVPKEN 160
                     99993........3578899*******999932.....222.....22222333.44588889999999999999************99999888 PP

       GAGA_bind 178 vkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272
                      ++++  +rska kks+d+v+ng++lD+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtttiS+yPLP+s+krrgaRiagrKmSqgafkk+LekL
  XP_027151295.1 161 GSSSG--QRSKAVKKSMDVVINGIDLDISGIPIPVCSCTGTPQQCYRWGCGGWQSACCTTTISMYPLPMSAKRRGARIAGRKMSQGAFKKVLEKL 253
                     88888..89************************************************************************************** PP

       GAGA_bind 273 aaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     aaeGy+++np+DL++hWAkHGtnkfvtir
  XP_027151295.1 254 AAEGYNFANPIDLRSHWAKHGTNKFVTIR 282
                     ****************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MDDDGLNMRN WGYYEPSSLK GNLALQLMSS VADRDTKPFL SGRDSGVMGA ANGVYHPRDY  60
LISGAPDHMD YVRDSWINHR DKFVHMFPGN PYNTVLPETS GTHQMQMLQQ PEPSKDARVS  120
VEDVGVRKEP GSAKKRAAVS VPKAPKSKKP KKNPAVPKEN GSSSGQRSKA VKKSMDVVIN  180
GIDLDISGIP IPVCSCTGTP QQCYRWGCGG WQSACCTTTI SMYPLPMSAK RRGARIAGRK  240
MSQGAFKKVL EKLAAEGYNF ANPIDLRSHW AKHGTNKFVT IR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.13e-93BBR-BPC family protein