PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027151487.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 410aa MW: 44292 Da PI: 6.1914

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027151487.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.1	8.3e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl XP_027151487.1 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	51.1	3.2e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l XP_027151487.1 67 RGKFSIQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SIQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG 120 IDPVTHKPKT DAILSNDGQS KHAANLSHMA QWESARLEAE ARLVRQSKLR SSSFHNPLAS 180 PEFSSPSSPL NKPALVPPGP PRCLDILKAW NGVWTKPNDD QAGTSAGGAA ASVTGLAGDL 240 ESPTSTLSYS ENAPQMSSNG IGDSSTAYIE FVGNSSGSCE GGMMKEEGEE DWKGIDNSMS 300 FTSGLQDMAI TVDNAHNSAW TGESLRPSPD SHQHVSGGGN FVERFTDLLL SSSGGGDRSF 360 CEGCGESDNG DASGSAGSGD ASHDYLEDNK NYWNSILNLV DSSPSDSPMF

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SIQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG  120
IDPVTHKPKT DAILSNDGQS KHAANLSHMA QWESARLEAE ARLVRQSKLR SSSFHNPLAS  180
PEFSSPSSPL NKPALVPPGP PRCLDILKAW NGVWTKPNDD QAGTSAGGAA ASVTGLAGDL  240
ESPTSTLSYS ENAPQMSSNG IGDSSTAYIE FVGNSSGSCE GGMMKEEGEE DWKGIDNSMS  300
FTSGLQDMAI TVDNAHNSAW TGESLRPSPD SHQHVSGGGN FVERFTDLLL SSSGGGDRSF  360
CEGCGESDNG DASGSAGSGD ASHDYLEDNK NYWNSILNLV DSSPSDSPMF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-113	MYB family protein