PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027152117.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 488aa MW: 54772.1 Da PI: 6.7389

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027152117.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.3	2.6e-16	136	182	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd l+++vk +G + W+ Ia++m gR +kqc++rw+++l XP_027152117.1 136 KGQWTEEEDNTLKRLVKHFGVKKWAQIAEKMV-GRAGKQCRERWHNHL 182 799***************************.***********97 PP
2	Myb_DNA-binding	55.2	1.6e-17	188	230	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W+ eE+ llv+a+ q G++ W+ Ia++++ gRt++++k++w+ XP_027152117.1 188 KDTWSLEEERLLVEAHMQVGNR-WAEIAKRIP-GRTENSIKNHWN 230 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MEEVSFLKPK PTLTAIDKFL LGQSHFCQPE ILANFKNKGN LVPVNFDFVS SSTSGGAIHS 60 HAREGEGLFP RPTILPPPHD TSSFVNGDFF NEESTPILSQ EMNLNSGFGE EEDLEPRVCR 120 RVGRRGKSGP SVALIKGQWT EEEDNTLKRL VKHFGVKKWA QIAEKMVGRA GKQCRERWHN 180 HLRPDIKKDT WSLEEERLLV EAHMQVGNRW AEIAKRIPGR TENSIKNHWN ATKRRQNSKR 240 RVKKPEGAQN GRNQSTILQE YIKSTCSNNN FLTNSADLRS TTVTPANSAT THPTPPNSVV 300 SEDPISPDFN LPYPEVCQST CDDSSFYMTQ QSYDDEMKFM QNLFGSNNLN ASSFGENDNR 360 KAPLDTGIDR KNKCYISFNP FGYNSSSGDN QSFGGNWDYG IFPSYAEPNM PTKPYLGDQE 420 NNQSASMYLD LYLPRILDGS NAITAPPDPS KMSMETLIMD QANPSVGKEV DLIEMVSNSQ 480 FAHKNAAK

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MEEVSFLKPK PTLTAIDKFL LGQSHFCQPE ILANFKNKGN LVPVNFDFVS SSTSGGAIHS  60
HAREGEGLFP RPTILPPPHD TSSFVNGDFF NEESTPILSQ EMNLNSGFGE EEDLEPRVCR  120
RVGRRGKSGP SVALIKGQWT EEEDNTLKRL VKHFGVKKWA QIAEKMVGRA GKQCRERWHN  180
HLRPDIKKDT WSLEEERLLV EAHMQVGNRW AEIAKRIPGR TENSIKNHWN ATKRRQNSKR  240
RVKKPEGAQN GRNQSTILQE YIKSTCSNNN FLTNSADLRS TTVTPANSAT THPTPPNSVV  300
SEDPISPDFN LPYPEVCQST CDDSSFYMTQ QSYDDEMKFM QNLFGSNNLN ASSFGENDNR  360
KAPLDTGIDR KNKCYISFNP FGYNSSSGDN QSFGGNWDYG IFPSYAEPNM PTKPYLGDQE  420
NNQSASMYLD LYLPRILDGS NAITAPPDPS KMSMETLIMD QANPSVGKEV DLIEMVSNSQ  480
FAHKNAAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	4e-65	MYB family protein