PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027152188.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 439aa MW: 48160.2 Da PI: 4.679

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027152188.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.5	2.3e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEde+l ++++ G g+W++ ++ g+ R++k+c++rw +yl XP_027152188.1 14 RGRWTAEEDEILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 8*****************************99**********97 PP
2	Myb_DNA-binding	57.7	2.6e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE+el++++++ lG++ W++Ia +m+ gRt++++k++w+++l XP_027152188.1 67 RGNITAEEEELIINLHASLGNR-WSLIAGHMP-GRTDNEIKNYWNSHL 112 7999****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence
MGRAPCCEKV GIKRGRWTAE EDEILTKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRSDLKRGNI TAEEEELIIN LHASLGNRWS LIAGHMPGRT DNEIKNYWNS HLSRQLHKFK 120 KPDSESSVPP GPLQPAAEVM DLVVEHGGGE VSKKRKGSRS NMRKNRSSTN PSQPKELAGP 180 AAATVQMPRT PTLEEETLSS AVSLEEGGTS KFVVSSSLMT DACAKRERRQ NLASTGTTSD 240 ECTPEVGETK SSVMLQPEGG LMTSGSDGAV GLDSGTFCLD EMMNIGDPDG ILTFHGNTTS 300 TKETCSETAA TNVERQCDNM DPGYYTTTTR ASNIVDDQEE TDKLGKMDVS NGRNQIGCTS 360 PAAHEDHHDG KLDDWDDWQW DEPVVQNNLT TLPGEEADLL SWLWDSDNNN NYLNSSGNFD 420 DGAGMDDEKH NAMVAWLLS

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence

MGRAPCCEKV GIKRGRWTAE EDEILTKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRSDLKRGNI TAEEEELIIN LHASLGNRWS LIAGHMPGRT DNEIKNYWNS HLSRQLHKFK  120
KPDSESSVPP GPLQPAAEVM DLVVEHGGGE VSKKRKGSRS NMRKNRSSTN PSQPKELAGP  180
AAATVQMPRT PTLEEETLSS AVSLEEGGTS KFVVSSSLMT DACAKRERRQ NLASTGTTSD  240
ECTPEVGETK SSVMLQPEGG LMTSGSDGAV GLDSGTFCLD EMMNIGDPDG ILTFHGNTTS  300
TKETCSETAA TNVERQCDNM DPGYYTTTTR ASNIVDDQEE TDKLGKMDVS NGRNQIGCTS  360
PAAHEDHHDG KLDDWDDWQW DEPVVQNNLT TLPGEEADLL SWLWDSDNNN NYLNSSGNFD  420
DGAGMDDEKH NAMVAWLLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	2e-76	MYB family protein