PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027152387.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 893aa MW: 102775 Da PI: 7.8383

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027152387.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.7	5.2e-20	159	249	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn YAk GF +rks+ k+ +g r++vC +eg+r+e+ + ++++r+ ++ trtgC a+++vk + + k++vt++ eHnH+la XP_027152387.1 159 EFYNLYAKLSGFGIRKSNGKRD-ADGISRFRKWVCCCEGYRNEKWFNyEDRKREAKPITRTGCGACFRVKYDIeSVKYVVTRFIMEHNHPLA 249 6*************998887.8998999********9988867889999************98899************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 893 aa Download sequence
MFSEELSLQH WVQECLPDSV IQLMDMNLVH LEDGPVKNKI ACISSILELA LCCTADASED 60 RMNMKDVLKA LQKIKLQFSE GLKPLKQETE NGRMGMDGCG RLRSFDLNQE PECDRHTFIE 120 ESGGSIGGHE DEEANELVGA IGVDDVMKLT FDTEEEAGEF YNLYAKLSGF GIRKSNGKRD 180 ADGISRFRKW VCCCEGYRNE KWFNYEDRKR EAKPITRTGC GACFRVKYDI ESVKYVVTRF 240 IMEHNHPLAS EASVQHIRSH RKVSDAEYAQ AKSLKLVGAR ICQIMKHFVI KAGGYSNVGF 300 CIKDLYNRMD EERRKDIFNG DAEGALGFLA AKKDADEMFF YKYDVDNEGR LARLFWADSK 360 SRADFSVFGD VLVFDTTYKT NKYRKPLVVL AGVNNHLNST IFGCALLSDE RIETYEWVLS 420 TFVEAMKGRK PVAVMTDGDS AMRRAIKNLL PDACHRLCSW HLHRNARSNI RCEEFNNRLY 480 NLMERKCSTL EFEDRWARLV NECGVVENEW VKELYRRRRL WAEAYLRGNF FAGMRSTQRC 540 EKMNAFLNEY LNEKMRLYEF VRSFDLAIAW LRHTESKAIH TSENTKPVLT TILPELEWSA 600 AEVFTRNVFF MVRKHLNRQG LLISEGWSED GGSRTYYYSK YGGHGISWRV DYDRSMENLI 660 CSCMKFESKG IPCAHMFRVM VVEGMNRIPE ACISKRWTKG VYCSNNGMKA FVADEQLTQM 720 ARYGTLKSSC NTMCYYASYM DDAFNDLQQM FDKHSVDLKE KWIDRGYGGD GFAMDSRVRN 780 DRSRRTFGLL DPRVSRCKGD HKHAEAKKKR KCGHCRLQAG HNQRTCPYKK NSHNTAVHDD 840 YMENCLDDSL EKSFEIGTGW SDSGEWRGPV VVPQPQGSGG RDTVGQQRSP GER

Sequence ? help Back to Top

Protein Sequence Length: 893 aa Download sequence

MFSEELSLQH WVQECLPDSV IQLMDMNLVH LEDGPVKNKI ACISSILELA LCCTADASED  60
RMNMKDVLKA LQKIKLQFSE GLKPLKQETE NGRMGMDGCG RLRSFDLNQE PECDRHTFIE  120
ESGGSIGGHE DEEANELVGA IGVDDVMKLT FDTEEEAGEF YNLYAKLSGF GIRKSNGKRD  180
ADGISRFRKW VCCCEGYRNE KWFNYEDRKR EAKPITRTGC GACFRVKYDI ESVKYVVTRF  240
IMEHNHPLAS EASVQHIRSH RKVSDAEYAQ AKSLKLVGAR ICQIMKHFVI KAGGYSNVGF  300
CIKDLYNRMD EERRKDIFNG DAEGALGFLA AKKDADEMFF YKYDVDNEGR LARLFWADSK  360
SRADFSVFGD VLVFDTTYKT NKYRKPLVVL AGVNNHLNST IFGCALLSDE RIETYEWVLS  420
TFVEAMKGRK PVAVMTDGDS AMRRAIKNLL PDACHRLCSW HLHRNARSNI RCEEFNNRLY  480
NLMERKCSTL EFEDRWARLV NECGVVENEW VKELYRRRRL WAEAYLRGNF FAGMRSTQRC  540
EKMNAFLNEY LNEKMRLYEF VRSFDLAIAW LRHTESKAIH TSENTKPVLT TILPELEWSA  600
AEVFTRNVFF MVRKHLNRQG LLISEGWSED GGSRTYYYSK YGGHGISWRV DYDRSMENLI  660
CSCMKFESKG IPCAHMFRVM VVEGMNRIPE ACISKRWTKG VYCSNNGMKA FVADEQLTQM  720
ARYGTLKSSC NTMCYYASYM DDAFNDLQQM FDKHSVDLKE KWIDRGYGGD GFAMDSRVRN  780
DRSRRTFGLL DPRVSRCKGD HKHAEAKKKR KCGHCRLQAG HNQRTCPYKK NSHNTAVHDD  840
YMENCLDDSL EKSFEIGTGW SDSGEWRGPV VVPQPQGSGG RDTVGQQRSP GER

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	515	520	YRRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-97	FAR1 family protein