PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027152476.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 339aa    MW: 38278.3 Da    PI: 6.5876
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027152476.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.21.7e-15255280126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +ktelC+ +++tG+C+yG++C+FaHg
  XP_027152476.1 255 FKTELCNKWQETGECPYGENCQFAHG 280
                     79***********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MEMEKEISKT GQRGGRTARN DVSFNNIPLP PASPPLPFIT YPGDIGLAPY RLSELEIRMM  60
MSRLRHSDML TDLHHHQELI DRQYTVLSYM EETAKEAQAL RQENISLKMI NAELTNRLSL  120
LLRATSEYAA SVELSGLGLG PGSDMSSVLH GLDKMSLGDG VNEDRRNRGD GVEGAGENTS  180
QDTMVDTDLA EGSENDEVNR VSLPKSISVR SDRKLKTVQT GGSSEGQIYK QRVYVPGSEK  240
EKQTVELEVY NQGMFKTELC NKWQETGECP YGENCQFAHG IKELRPVLRH PRYKTEVCRM  300
VLSGDHCPYG HRCHFRHTLT DEEKLIRSMN IRPLKPLNR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.28e-70C3H family protein