PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027152492.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family LBD
Protein Properties Length: 155aa    MW: 17328.6 Da    PI: 7.069
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027152492.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.82.5e-4051041100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C++dC+++pyfp ++p++f  vh+++Gasnv k+l+++p ++r +a++s+ yeA++r++dPvyG++g+i+ l+qq++ ++ ela
  XP_027152492.1   5 RCAACKYLRRRCSPDCIFSPYFPPNNPQRFLEVHRIYGASNVAKMLEKAPVNQRAEAANSIHYEAHCRIKDPVYGCAGIITLLNQQINDAQCELA 99 
                     6********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_027152492.1 100 KIQAE 104
                     99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    
MNSTRCAACK YLRRRCSPDC IFSPYFPPNN PQRFLEVHRI YGASNVAKML EKAPVNQRAE  60
AANSIHYEAH CRIKDPVYGC AGIITLLNQQ INDAQCELAK IQAEIAALNG HHADILPPYQ  120
QITDASSFAN YPVEGDGAFP ATHDPSFPQF YLNSW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.12e-50LBD family protein