PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027152524.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family YABBY
Protein Properties Length: 182aa    MW: 19896.5 Da    PI: 8.9056
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027152524.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY147.31.6e-45191641163
           YABBY   1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 
                     +d++++se++Cyv+CnfCnt+lav +P + l+  vtv+CGhC +l  +       +++    l+ +       e++ + +++ s ++k +s+s+ 
  XP_027152524.1  19 MDLVQQSEHLCYVRCNFCNTVLAVGIPCKRLLDAVTVKCGHCGNLSFL------STRPPPP-LQGQC-----FEHQPTIQTFFSDMKKGQSSSS- 100
                     578999*************************************97442......2333333.22222.....2233333333333333333222. PP

           YABBY  96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                      ss   s++ + ++p++p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa +
  XP_027152524.1 101 -SS---STSGEPSSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY 164
                     .22...45778899****************************************************76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    
MSSHSSSSSS LNLEDKTTMD LVQQSEHLCY VRCNFCNTVL AVGIPCKRLL DAVTVKCGHC  60
GNLSFLSTRP PPPLQGQCFE HQPTIQTFFS DMKKGQSSSS SSSTSGEPSS PKAPFVVKPP  120
EKKHRLPSAY NRFMKEEIQR IKAANPEIPH REAFSAAAKN WARYIPTAPT GSIAESSNSN  180
HA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.14e-65YABBY family protein