PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027152539.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 334aa    MW: 36836.4 Da    PI: 8.1029
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027152539.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.1e-16102147147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
   XP_027152539.1 102 RGHWRPAEDTKLRELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 147
                      899*****************************.***********996 PP
2Myb_DNA-binding574.3e-18154198147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r ++T+eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ +
   XP_027152539.1 154 RRAFTEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHVV 198
                      678*******************.*********.***********976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MGMIFEDMSC LSISPNYLSS SRDSLHEGRP CWGFSFMPKC LLEESQNSDV GEGKGSSDCS  60
DGFGETGNQP IDLNADLSEE KQSNNLQAVG SRDSGQSKLC ARGHWRPAED TKLRELVALY  120
GPQNWNLIAE KLEGRSGKSC RLRWFNQLDP RINRRAFTEE EEERLMAAHR LYGNKWAMIA  180
RLFPGRTDNA VKNHWHVVMA RKYREQSSAY RRRKMGQFVC GRVEDHDRSF VSRRDASAPI  240
KTESTGPPPP NYTLINNSNG TLLGNLTACS SGGNLNGGVG AGGIGIACGS NISPHMAAGG  300
EARARFLVFL PYLVASNCSF FIFVVSNIAL DFGH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.14e-81MYB family protein