PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027152542.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family LBD
Protein Properties Length: 152aa    MW: 17219.7 Da    PI: 6.4835
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027152542.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.41.5e-40241241101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk lrr+C+++Cvlapyfp+++p +f++vhk++Gasn+++ l++lpe +r+da++s+vyeA ar+rdPvyG++g+++ lqqq+  l++ela
  XP_027152542.1  24 PCAACKSLRRRCSDKCVLAPYFPSSEPLRFNIVHKVYGASNIIRRLQELPEPQRSDAVNSMVYEAGARIRDPVYGCAGTVTLLQQQILGLQEELA 118
                     7********************************************************************************************** PP

          DUF260  96 llkeel 101
                     ++++e+
  XP_027152542.1 119 KAQAEI 124
                     *99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    
MEHCRQQNTP PSPYQNATPP TQYPCAACKS LRRRCSDKCV LAPYFPSSEP LRFNIVHKVY  60
GASNIIRRLQ ELPEPQRSDA VNSMVYEAGA RIRDPVYGCA GTVTLLQQQI LGLQEELAKA  120
QAEILNMQCQ IANLVSLDWM EMFPSQEQET FN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.18e-51LBD family protein