PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027152604.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 263aa MW: 30333.1 Da PI: 4.8894

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027152604.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.7	1.3e-13	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l + + G +W+++++ g+ R++k+c++rw +yl XP_027152604.1 14 RGPWTVEEDNKLMNFILNNGIQCWRLVPKLAGLMRCGKSCRLRWINYL 61 89********************************************97 PP
2	Myb_DNA-binding	59.6	7e-19	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+WT+ E++ +++++ +lG++ W++Ia++++ gRt++++k++w++ XP_027152604.1 67 RGAWTEAEEDMIIELHSRLGNR-WSKIAAHFP-GRTDNEIKNHWNT 110 89******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence
MGRQPCCDKV GLKRGPWTVE EDNKLMNFIL NNGIQCWRLV PKLAGLMRCG KSCRLRWINY 60 LRPDLKRGAW TEAEEDMIIE LHSRLGNRWS KIAAHFPGRT DNEIKNHWNT KIKKKLKFLG 120 LDPLTHKPID QPENCVSKSE EFRENSSLGE QEVLKLELQE TLQSEDFQTQ QNEKNLNTNL 180 HEQQSTGTSS SSLDEEKPNL ASMFNETREF PETGSIEIQN SEPLDAISYI VGTNDIQLED 240 PFQNWIDSPL PWDVFSSLGE NFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14340.1	1e-88	MYB family protein