PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027153027.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 215aa MW: 24242.1 Da PI: 6.702

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027153027.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.5	4.9e-16	14	60	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +W+++Ed+ l d++k++G g+W+ I++ g+ R++k+c++rw +yl XP_027153027.1 14 RSWSPQEDQELMDYIKKHGEGHWRNIPKATGLLRCGKSCRLRWVNYL 60 68***************************99**********97 PP
2	Myb_DNA-binding	50.2	6e-16	66	111	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg + ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l XP_027153027.1 66 RGDFAEDEEDLIIRLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 111 788999**************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence
MRKPCCDKEG MHKRSWSPQE DQELMDYIKK HGEGHWRNIP KATGLLRCGK SCRLRWVNYL 60 RPDLKRGDFA EDEEDLIIRL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH LSKKLASMGI 120 DPKHHRLSHH LARNLINSIA AGETSSALEH HQPFPLDHDQ IKSSSASDHY QASDAGDGIN 180 DDDDSSSLLP DLNVDMASDS SLPSGTTTED KMSLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	6e-68	MYB family protein