PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027153132.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 297aa    MW: 33523.5 Da    PI: 5.8026
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027153132.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.2e-1883135456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     + +++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  XP_027153132.1  83 KKRLNLEQVKVLEKSFELGSKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 135
                     4568889*********************************************9 PP
2HD-ZIP_I/II122.61.9e-3981172192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekk+rl+ eqvk+LE+sFe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkq+Ekdye+Lkr+++ lk++ne L++++++ ++el 
  XP_027153132.1  81 EKKKRLNLEQVKVLEKSFELGSKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQMEKDYEVLKRQVEILKADNELLRAQNKRFHSELV 172
                     69************************************************************************************999986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MIHGNMETFF PVDSMFQNHQ DHDRLPSSNN PSAPCTAHHD FPGISGALMR RSMSFSGVDM  60
SEEALRLEDD MSDDGAAPLG EKKKRLNLEQ VKVLEKSFEL GSKLEPERKM QLARALGLQP  120
RQVAIWFQNR RARWKTKQME KDYEVLKRQV EILKADNELL RAQNKRFHSE LVALQSVELS  180
AAVEPINLNN RENEASWSSG SRENSIDVNL GTTSVETGLI IPNSHPTSNH MPFPSTMEQP  240
AVGPTHHLLQ ASLGPDLQGP RIDQTTSDEA LCNAFNNIEE QPSFSPWSTW PNQQNFR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130138RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01220.19e-66HD-ZIP family protein