PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027153830.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 387aa MW: 43167.2 Da PI: 7.8899

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027153830.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33	1e-10	83	104	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+++ rtG+Ck+G +CkF+H+ XP_027153830.1 83 DCPHYVRTGICKFGLTCKFNHP 104 5********************9 PP
2	zf-CCCH	29.9	9.9e-10	126	148	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C++++ G CkyG+ C+++H++ XP_027153830.1 126 ECKYYSTAGGCKYGEACRYSHSK 148 7********************95 PP
3	zf-CCCH	31.3	3.5e-10	170	193	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C++++r+G C yG +C F+H++ XP_027153830.1 170 KECPYYMRNGSCGYGTQCVFHHPE 193 58********************96 PP
4	zf-CCCH	28	3.6e-09	294	320	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +f++tG Ck+ + C+F+H++ XP_027153830.1 294 PGQPECAYFMKTGDCKFKSACRFHHPK 320 5789*********************96 PP
5	zf-CCCH	27.1	7.1e-09	336	361	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++ +Cr++ r+G+Ck+G C F H+ XP_027153830.1 336 PGRNICRHYERFGICKFGRVCLFDHP 361 57899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MGTYEDDHVS INITTSQLKR QAQETELGFS SSGLNSQTER ALVAEFQNVG LNSFDNDNRG 60 GLNSAHNDSG GPQRLPLRPY AGDCPHYVRT GICKFGLTCK FNHPVKKTSL VVKDKDWSSD 120 NAGQIECKYY STAGGCKYGE ACRYSHSKKE SQVAAPKFNF LGLPMRLGGK ECPYYMRNGS 180 CGYGTQCVFH HPEPSSMGGL DLQKSSLNAS QPNQVPWSTR PLSSTLSYRN DYSSHTIANS 240 VPQWMHGHSE FNECQAEEVP QQRSRNAHLV SGAARADMLE QDIPVQVEEF PERPGQPECA 300 YFMKTGDCKF KSACRFHHPK GQPTCILSEK GLPLRPGRNI CRHYERFGIC KFGRVCLFDH 360 PVHPNLSTFK DWPSSEPSGY DAGSWMQ

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MGTYEDDHVS INITTSQLKR QAQETELGFS SSGLNSQTER ALVAEFQNVG LNSFDNDNRG  60
GLNSAHNDSG GPQRLPLRPY AGDCPHYVRT GICKFGLTCK FNHPVKKTSL VVKDKDWSSD  120
NAGQIECKYY STAGGCKYGE ACRYSHSKKE SQVAAPKFNF LGLPMRLGGK ECPYYMRNGS  180
CGYGTQCVFH HPEPSSMGGL DLQKSSLNAS QPNQVPWSTR PLSSTLSYRN DYSSHTIANS  240
VPQWMHGHSE FNECQAEEVP QQRSRNAHLV SGAARADMLE QDIPVQVEEF PERPGQPECA  300
YFMKTGDCKF KSACRFHHPK GQPTCILSEK GLPLRPGRNI CRHYERFGIC KFGRVCLFDH  360
PVHPNLSTFK DWPSSEPSGY DAGSWMQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	2e-86	C3H family protein