PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027154029.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MIKC_MADS

Protein Properties

Length: 231aa MW: 26250.6 Da PI: 8.3046

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027154029.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100	9.5e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s XP_027154029.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	87.6	2.5e-29	81	166	7	92
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 ++ +++ ++s+++e+ kLk ++e+Lqr qRhllG+dL++L++++L++Le+qLe+slk +Rs++++++l+q+++lq k +++ en+ XP_027154029.1 81 SHSAKEIEQSSYKEYLKLKGKYESLQRYQRHLLGDDLGPLNINDLEHLEHQLESSLKLVRSTRTQVMLDQLSDLQTKLEDIYAENH 166 4466777899*********************************************************************9999987 PP

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SNMLRTLERY QRCSYGAVEV SHSAKEIEQS SYKEYLKLKG KYESLQRYQR HLLGDDLGPL 120 NINDLEHLEH QLESSLKLVR STRTQVMLDQ LSDLQTKLED IYAENHLHQS WGGGGEQSNT 180 YSQQHSQSQG FFQPLECSSG LQIGYNPASS SQITAVTNAQ NVSGLVPGWM L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02310.1	7e-81	MIKC_MADS family protein